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I am trying to upgrade the version of substrate on my running blockchain from version v0.9.25 to v0.9.36, everything is fine but after runtime upgrade my terminal shows this [869] 🏊‍♂️ Running migration with current storage version StorageVersion(3) / onchain StorageVersion(1)
2023-02-28 11:17:29 [869] 🏊‍♂️ MigrateToV2 did not executed. This probably should be removed
and when I try to do any transaction on my upgraded blockchain the block generation and finalisation is stopped.Is there any way to correct this...

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It looks like the logs are telling you that the onchain storage version is 1 and the migration is running with the storage version of 3 when the migration to 2 never happened.

Every version could have its own storage migrations. It is recommended you upgrade version-by-version instead of between two distant versions.

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